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MEGA QUANDRY: Oxygen 8 Midi Controller and Pro Tools LE

I just bought a protools Mbox 2 system, a new laptop PC, and a midi controller. Im running my oxygen 8 through the usb port, my guitar through input 1, and my condenser through input two. Although I'm only trying to record guitar, my computer seems to only record my midi controller data, which is coming through the usb port. I'm getting a signal from my guitar but it won't record the data, theres no wavelength thing being recorded. What do i do? i was trying to use the s/pdif to run these bose monitors, would i have accidently switched something up so it is running through an s/pdif output? I'm really confused, i just need to record guitar, and need to know what settings or preferences need to be adjusted. please help!